Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs1120985 | chr1:48810112 | A/G | 7.74E-5 | 490 | 17.83 | 14.78 | 14.67 | KM Plot |
| THCA | rs112108267 | chr2:48117916 | C/G | 4.34E-8 | 489 | 15.17 | 18.9 | 8.27 | KM Plot |
| THCA | rs11211132 | chr1:45990516 | T/C | 7.06E-5 | 486 | 10.8 | 16.18 | 16.87 | KM Plot |
| THCA | rs112137391 | chr15:65720555 | T/TG | 0.000186 | 478 | 15.68 | 15.9 | 17.48 | KM Plot |
| THCA | rs112170461 | chr6:24407305 | G/A | 4.55E-15 | 490 | 16.38 | 14.8 | 11.07 | KM Plot |
| THCA | rs112171060 | chr14:59858269 | A/G | 0.000167 | 487 | 16.3 | 14.9 | 5.45 | KM Plot |
| THCA | rs112221644 | chr1:219538810 | T/C | 3.28E-7 | 488 | 15.9 | 17.23 | 7.93 | KM Plot |
| THCA | rs112224955 | chr10:104926876 | G/A | 6.25E-9 | 488 | 15.32 | 17.63 | 32.1 | KM Plot |
| THCA | rs11223646 | chr11:133839560 | C/T | 0.00019 | 490 | 16.07 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223647 | chr11:133839588 | G/A | 0.00019 | 490 | 16.07 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223648 | chr11:133840412 | C/T | 3.98E-5 | 485 | 15.97 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223649 | chr11:133840471 | T/C | 7.72E-5 | 489 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223650 | chr11:133840647 | A/G | 8.91E-5 | 487 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223651 | chr11:133841034 | A/G | 0.000121 | 490 | 8.73 | 15.9 | 16.02 | KM Plot |
| THCA | rs11223652 | chr11:133841207 | A/G | 0.000142 | 488 | 15.9 | 15.9 | 8.73 | KM Plot |